Science & Research

Scientific computing, bioinformatics, physics simulations and research software

349 repos
synthetic-sciences

synthetic-sciences

openscience
TypeScript Rising Star AI analysis

OpenScience is an AI-powered workbench for scientific research that automates the full research loop—literature review, hypothesis formation, code...

Production ready Niche use case
agent ai ai-agent
2k
284
14
1.3k/wk +275 yesterday
active
8/10 Science
HughYau

HughYau

AcademicForge
Python Rising Star AI analysis

Academic Forge is a curated platform for installing and managing AI skills for academic writing and research, designed specifically for Claude Code,...

Production ready Beginner friendly Single maintainer Niche use case
ai ai-for-research research-tool
2.3k
135
2
307/wk
active
7/10 Science
wdcpclover

wdcpclover

ai4paper
JavaScript Rising Star AI analysis

AI4Paper is a specialized Zotero plugin that integrates AI-powered literature research and writing assistance for academic workflows. It serves...

Production ready Beginner friendly Single maintainer Niche use case
2.2k
38
11
184/wk +31 yesterday
active
8/10 Science
brycewang-stanford

brycewang-stanford

Auto-Empirical-Research-Skills
Stata Rising Star AI analysis

A curated library of 1,150+ AI agent skills for empirical research across 8 social science disciplines (economics, political science, sociology,...

Production ready Niche use case
academic-research agent-skills ai-agent
2.8k
375
7
226/wk
active
7/10 Science
Yuan1z0825

Yuan1z0825

nature-skills
Python AI analysis

Nature-Skills is a collection of AI agent skills designed specifically for academic researchers conducting paper analysis, scientific writing, figure...

Production ready Beginner friendly Single maintainer Niche use case
codex-skills nature nature-skills
27.5k
1.7k
2.2k/wk +102 yesterday
active
8/10 Science
google-deepmind

google-deepmind

science-skills
Python Rising Star AI analysis

Science Skills is a curated collection of agent skills for scientific research tasks spanning genomics, structural biology, cheminformatics, and...

Production ready Niche use case
2.3k
234
1
138/wk
active
7/10 Science
54yyyu

54yyyu

zotero-mcp
Python Rising Star AI analysis

Zotero MCP connects your Zotero research library to Claude, ChatGPT, and other AI assistants via the Model Context Protocol, enabling semantic...

Production ready Single maintainer Niche use case
claude mcp semantic-search
4.2k
351
81
194/wk
active
8/10 Science
ChenLiu-1996

ChenLiu-1996

figures4papers
Python Rising Star AI analysis

A curated collection of Python scripts for generating publication-quality scientific figures (bar plots, heatmaps, radar plots, 3D visualizations,...

Production ready Single maintainer Niche use case
acl cvpr eccv
2.7k
165
98/wk
recent
8/10 Science
gumyr

gumyr

build123d
Python Rising Star AI analysis

build123d is a Python-based parametric CAD library built on Open Cascade that enables programmatic creation of 2D/3D models for 3D printing, CNC...

Production ready Single maintainer Niche use case
brep build123d cad
2.6k
241
356
71/wk
active
8/10 Science
omicverse

omicverse

omicverse
Python AI analysis

OmicVerse is a specialized Python library for integrated analysis of multi-omics data, including bulk RNA-seq, single-cell RNA-seq, and spatial...

Production ready Niche use case
bioinformatics bulk-rna-seq omics
1.1k
142
12
24/wk
active
7/10 Science
K-Dense-AI

K-Dense-AI

scientific-agent-skills
Python AI analysis

Scientific Agent Skills is a collection of 148 ready-to-use skills and 100+ scientific database integrations designed to transform any AI agent into...

Production ready Niche use case
agent-skills ai-scientist bioinformatics
30.6k
3.1k
39
645/wk +87 yesterday
active
8/10 Science
ClawBio

ClawBio

ClawBio
Python AI analysis

ClawBio is a bioinformatics-native AI agent skill library built on OpenClaw, offering 92 skills (29 production-ready) for genomic analysis,...

Production ready Niche use case
ai-agents bioinformatics equity
1k
223
13
17/wk
active
8/10 Science
ERGO-Code

ERGO-Code

HiGHS
C++ AI analysis

HiGHS is a high-performance linear optimization solver supporting linear programming (LP), convex quadratic programming (QP), and mixed-integer...

Production ready Niche use case
high-performance interior-point-method linear-optimization
1.7k
333
174
24/wk
active
8/10 Science
delibae

delibae

claude-prism
TypeScript AI analysis

ClaudePrism is a desktop application for scientific writing that combines LaTeX, Python, and Claude AI in an offline-first workspace. It serves...

Production ready Beginner friendly Single maintainer Niche use case
academic ai claude
1.7k
154
31
27/wk
active
8/10 Science
handsome-rich

handsome-rich

Awesome-Auto-Research-Tools
Python AI analysis

Awesome Auto Research Tools is a curated collection of open-source projects that automate the full scientific research lifecycle—from literature...

Single maintainer Niche use case
1.1k
84
11
17/wk
active
7/10 Science
pvlib

pvlib

pvlib-python
Python AI analysis

pvlib-python is a specialized toolbox for simulating photovoltaic energy system performance and related solar energy calculations. It provides...

Production ready Niche use case
photovoltaic python renewable-energy
1.6k
1.2k
267
26/wk
active
8/10 Science
Open-Cascade-SAS

Open-Cascade-SAS

OCCT
C++ AI analysis

Open CASCADE Technology (OCCT) is a specialized C++ software platform for 3D CAD/CAM/CAE applications, providing services for surface and solid...

Production ready Niche use case
cad cae cam
2.6k
645
131
33/wk
active
8/10 Science
openscad

openscad

openscad
C++ AI analysis

OpenSCAD is a specialized CAD modeler for engineers and makers who want to programmatically design 3D objects using a script-based, CSG-based...

Production ready Niche use case
c-plus-plus c-plus-plus-17 cad
9.8k
1.7k
818
122/wk spike
active
8/10 Science
skyllwt

skyllwt

AutoSci
Python AI analysis

AutoSci is a research agent platform designed to automate the full scientific research lifecycle—from literature review through experimentation to...

Single maintainer Niche use case
1.5k
204
3
24/wk
active
7/10 Science
mpmath

mpmath

mpmath
Python AI analysis

mpmath is a mature Python library for arbitrary-precision floating-point arithmetic, enabling computations at any precision rather than machine...

Production ready Niche use case
arbitrary-precision complex-numbers floating-point
1.2k
214
83
16/wk
active
8/10 Science
NVIDIA

NVIDIA

earth2studio
Python AI analysis

Earth2Studio is an NVIDIA-backed Python framework for building and deploying AI-driven weather and climate prediction workflows. It specializes in...

Production ready Niche use case
ai climate-science deep-learning
1k
226
26
13/wk
active
8/10 Science
ResearAI

ResearAI

AutoFigure-Edit
Python AI analysis

AutoFigure-Edit generates editable SVG scientific illustrations from method text descriptions in research papers, turning static text into...

Production ready Niche use case
3.9k
261
11
48/wk
recent
8/10 Science
google-deepmind

google-deepmind

mujoco_warp
Python AI analysis

MuJoCo Warp (MJWarp) is a GPU-accelerated physics simulator built on NVIDIA Warp, designed specifically for high-throughput robotics simulation on...

Production ready Niche use case
mujoco-warp nvidia-warp
1.4k
177
44
16/wk
active
8/10 Science
leanprover-community

leanprover-community

mathlib4
Lean AI analysis

Mathlib4 is a user-maintained mathematics library for the Lean 4 theorem prover, providing both programming infrastructure and formal mathematics...

Production ready Niche use case
lean4
3.6k
1.5k
3k
42/wk
active
8/10 Science
opensim-org

opensim-org

opensim-core
C++ AI analysis

OpenSim is a specialized software platform for musculoskeletal biomechanics simulation, enabling researchers and clinicians to build anatomical...

Production ready Niche use case
biological-simulations biomechanics computational-biology
1.1k
373
411
9/wk
active
8/10 Science
OpenFOAM

OpenFOAM

OpenFOAM-dev
C++ AI analysis

OpenFOAM is a specialized computational fluid dynamics (CFD) software package for simulating complex fluid flows, heat transfer, turbulence, chemical...

Production ready Niche use case
2.2k
719
6
17/wk
active
8/10 Science
mims-harvard

mims-harvard

ToolUniverse
Python AI analysis

ToolUniverse is a framework for building AI scientist systems that standardizes how large language models interact with over 1000 ML models,...

Production ready Niche use case
agents ai-agents ai-communication
1.5k
235
21
17/wk
active
8/10 Science
tsinghua-fib-lab

tsinghua-fib-lab

AgentSociety
Python AI analysis

AgentSociety 2 is an LLM-native agent simulation platform for creating multi-agent systems in urban environments and research workflows, designed...

Production ready Niche use case
agent agent-based-modeling agentsociety2
1.1k
196
38
12/wk
active
7/10 Science
KLayout

KLayout

klayout
C++ AI analysis

KLayout is a specialized EDA (Electronic Design Automation) tool for GDS2 file visualization, editing, and manipulation, primarily serving...

Production ready Niche use case
eda gds2 klayout
1.1k
286
218
8/wk
active
7/10 Science
HKUDS

HKUDS

AI-Researcher
Python AI analysis

AI-Researcher is a system for autonomous scientific research automation that accepts research ideas or reference papers and orchestrates end-to-end...

Production ready Niche use case
ai-researcher
5.6k
706
67
55/wk
slow
7/10 Science

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